The plugin can now be ran from a BungeeCord instance as well.
If ran from BungeeCord:
It must use MySQL and not flat file support.
There must also be the plugin running on the hub server or the servers you want it to run.
BungeeCord commands like /server will be blocked. (They will not if using BungeeCord and have not put the plugin with MySQL on a bungee server as well).